PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g09960.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family CO-like
Protein Properties Length: 426aa    MW: 46698.7 Da    PI: 5.8616
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g09960.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box171.2e-05544639
        zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    C+ +++++   +C+++  +lC +C  + H+       H++
  Vang01g09960.1  5 CDFCGDQRSLVYCRSDAACLCLSCDRNVHSAnalsrrHSR 44
                    *****************************65667777765 PP

2zf-B_box22.52.4e-074689441
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                      C++++++++   C +++  lC++C    H +      H++++
  Vang01g09960.1 46 LLCERCNSQPAFVRCVEDKISLCQNCDWLAHGSsptsstHKRQT 89
                    68*************************99994488888888766 PP

3CCT61.43e-21354396143
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                     R +a++RYkeK+ktRkFeKk+rY+sRKa+A+ R RvKGrFvk+
  Vang01g09960.1 354 RSNAVMRYKEKKKTRKFEKKVRYASRKARADVRRRVKGRFVKA 396
                     899**************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.471147IPR000315B-box-type zinc finger
SMARTSM003366.0E-9447IPR000315B-box-type zinc finger
CDDcd000216.24E-7447No hitNo description
PROSITE profilePS501199.24390IPR000315B-box-type zinc finger
CDDcd000211.06E-44790No hitNo description
SMARTSM003360.124890IPR000315B-box-type zinc finger
PROSITE profilePS5101715.398354396IPR010402CCT domain
PfamPF062033.0E-16354396IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MGYLCDFCGD QRSLVYCRSD AACLCLSCDR NVHSANALSR RHSRSLLCER CNSQPAFVRC  60
VEDKISLCQN CDWLAHGSSP TSSTHKRQTI NCYSGCPSAA EFSSIWSFFL DIPSMGEACE  120
QELGLMSINE NGNKSDLVPP EGTNVSGSSQ VTDLPTKGKF WAGTSSIPVS DSEPRILDQL  180
PEPGNECMPK LNCPGKKISG ICEDDNLYDD FIMDEVDLEL ENYQELFGMA LSHSEELFEN  240
GGIESLFETK DMSASVGESH CHGAVAAEGS STGLVNAIQP ACSNAASVDS MLSTKTEPIV  300
CFTGRQSQSN ISFSGVTKDS AGDYQECDAS SMLLMGEPPW CPPCPESSLH SANRSNAVMR  360
YKEKKKTRKF EKKVRYASRK ARADVRRRVK GRFVKAGCNI LSLSFCHVFC RIYMCAARGV  420
MAQQFL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014505158.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_014505159.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_014505160.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_014505161.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_014505162.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_014505163.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9SSE51e-138COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A0S3R2P00.0A0A0S3R2P0_PHAAN; Uncharacterized protein
STRINGGLYMA02G38870.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43623353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-110CONSTANS-like 9